SNP Report

Basic Info
Name rs6899351 dbSNP Ensembl
Location chr6:122787961 - 122787961(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.172923
Functional Annotation downstream_gene_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000368444); upstream_gene_variant(ENST00000368440, ENST00000487215, ENST00000539041)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Iwayama, Y., 2010 T/C P-value for allele test is 0.6507, p-value for genotype test...... P-value for allele test is 0.6507, p-value for genotype test is 0.9025, p-value is 1 after correction by permutation test. More... Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
FABP7 fatty acid binding protein 7, brain 6q22-q23 1(1/0/0)
SMPDL3A sphingomyelin phosphodiesterase, acid-like 3A 6q22.32 Mapped by Literature SNP

SNPs in LD with rs6899351 (count: 2) View in gBrowse (chr6:122787961..122797355 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 2)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)