SNP Report

Basic Info

Name	rs6899351 dbSNP Ensembl
Location	chr6:122787961 - 122787961(1)
Variant Alleles	T/C
Ancestral Allele	T
Minor Allele	C
Minor Allele Frequence	0.172923
Functional Annotation	downstream_gene_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000368444); upstream_gene_variant(ENST00000368440, ENST00000487215, ENST00000539041)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Iwayama, Y., 2010	T/C		P-value for allele test is 0.6507, p-value for genotype test...... P-value for allele test is 0.6507, p-value for genotype test is 0.9025, p-value is 1 after correction by permutation test. More...		Negative

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
FABP7	fatty acid binding protein 7, brain	6q22-q23	1(1/0/0)
SMPDL3A	sphingomyelin phosphodiesterase, acid-like 3A	6q22.32	Mapped by Literature SNP

SNPs in LD with rs6899351 (count: 2) View in gBrowse (chr6:122787961..122797355 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs9375185		downstream_gene_variant; intron_variant	0.815[CHB]; 0.807[JPT]
rs9372717		intron_variant; non_coding_transcript_variant	0.863[CHB]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)