SNP Report

Basic Info

Name	rs6733011 dbSNP Ensembl
Location	chr2:98849039 - 98849039(1)
Variant Alleles	A/G
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.414736
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000397899, ENST00000415261, ENST00000420294, ENST00000423771, ENST00000428096, ENST00000462314); non_coding_transcript_variant(ENST00000462314)
No. of Studies	1 (Positive: 0; Negative: 0; Trend: 1)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Scott, L. J.,2009	G/A		NIMH/Pritzker: OR (95% CI)=1.11(0.95-1.29), P-value = 0.19; ...... NIMH/Pritzker: OR (95% CI)=1.11(0.95-1.29), P-value = 0.19; GSK(reduced sample): OR (95% CI)=1.13(0.96-1.32), P-value = 0.14; WTCCC: OR (95% CI)=1.2(1.11-1.29), P-value = 0.0000019; 3-study meta-analysis: OR (95% CI)=1.17(1.1-1.25), P-value = 0.0000026; Heterogeneity: I²%=0, P-value = 0.59 More...		Trend

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
KIAA1211L	KIAA1211-like	2q11.2	Mapped by Literature SNP

SNPs in LD with rs6733011 (count: 2) View in gBrowse (chr2:98773407..98849039 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs10189330		upstream_gene_variant	0.856[CEU]
rs13389386		downstream_gene_variant	0.848[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)