SNP Report

Basic Info
Name rs6733011 dbSNP Ensembl
Location chr2:98849039 - 98849039(1)
Variant Alleles A/G
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.414736
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000397899, ENST00000415261, ENST00000420294, ENST00000423771, ENST00000428096, ENST00000462314); non_coding_transcript_variant(ENST00000462314)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Scott, L. J.,2009 G/A NIMH/Pritzker: OR (95% CI)=1.11(0.95-1.29), P-value = 0.19; ...... NIMH/Pritzker: OR (95% CI)=1.11(0.95-1.29), P-value = 0.19; GSK(reduced sample): OR (95% CI)=1.13(0.96-1.32), P-value = 0.14; WTCCC: OR (95% CI)=1.2(1.11-1.29), P-value = 0.0000019; 3-study meta-analysis: OR (95% CI)=1.17(1.1-1.25), P-value = 0.0000026; Heterogeneity: I2%=0, P-value = 0.59 More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
KIAA1211L KIAA1211-like 2q11.2 Mapped by Literature SNP

SNPs in LD with rs6733011 (count: 2) View in gBrowse (chr2:98773407..98849039 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 2)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)