SNP Report

Basic Info

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Li, J.,2011(b)	A/G		Third-Stage Sample: for BPD, allele association P-value = 0....... Third-Stage Sample: for BPD, allele association P-value = 0.03, OR(95%CI)=0.86(0.75-0.99) More...	Significant association was found . Significant association was found .	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
BCL9	B-cell CLL/lymphoma 9	1q21	1(1/0/0)

SNPs in LD with rs672607 (count: 16) View in gBrowse (chr1:147581540..147598816 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs10900382	intron_variant	0.821[JPT]
rs7526407	intron_variant; upstream_gene_variant	0.953[JPT]
rs2353525	intron_variant; upstream_gene_variant	0.956[JPT]
rs637784	intron_variant	1.0[CHB]; 1.0[JPT]
rs614502	intron_variant	1.0[CHB]; 1.0[JPT]
rs644105	intron_variant	1.0[CHB]; 1.0[JPT]
rs10900379	intron_variant	0.953[JPT]
rs10465881	intron_variant; upstream_gene_variant	0.953[JPT]
rs11240089	intron_variant	0.953[JPT]
rs2132441	intron_variant	0.953[JPT]
rs672619	intron_variant	1.0[CHB]; 0.87[JPT]
rs6695965	intron_variant	0.954[JPT]
rs10793693	intron_variant	0.956[JPT]
rs645388	intron_variant	1.0[CHB]; 0.872[JPT]
rs1390507	intron_variant	0.907[JPT]
rs666106	intron_variant	1.0[CHB]; 1.0[JPT]

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Li, J.,2011(b)	Third-Stage Sample:for SZ, allele association P-value = 0.006, OR(95%CI)=0.82(0.72-0.94);Combined Third-Stage Sample, allele association P-value = 0.0000000000123, OR(98%CI)=0.79(0.74-0.85)	Significant association was observed in SZ.	Positive

Overlap with MDD from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Li, J.,2011(b)	Third-Stage Sample:for MDD, allele association P-value = 0.001, OR(95%CI)=0.79(0.69-0.90)	Significant association was observed in MDD.	Positive