BDgene

SNP Report

Basic Info
Name rs672607 dbSNP Ensembl
Location chr1:147581540 - 147581540(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.201278
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000234739)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? YES

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Li, J.,2011(b) A/G Third-Stage Sample: for BPD, allele association P-value = 0....... Third-Stage Sample: for BPD, allele association P-value = 0.03, OR(95%CI)=0.86(0.75-0.99) More... Significant association was found . Significant association was found . Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
BCL9 B-cell CLL/lymphoma 9 1q21 1(1/0/0)

SNPs in LD with rs672607 (count: 16) View in gBrowse (chr1:147581540..147598816 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 16)


Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Li, J.,2011(b) Third-Stage Sample:for SZ, allele association P-value = 0.006, OR(95%CI)=0.82(0.72-0.94);Combined Third-Stage Sample, allele association P-value = 0.0000000000123, OR(98%CI)=0.79(0.74-0.85) Significant association was observed in SZ. Positive

Overlap with MDD from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Li, J.,2011(b) Third-Stage Sample:for MDD, allele association P-value = 0.001, OR(95%CI)=0.79(0.69-0.90) Significant association was observed in MDD. Positive