SNP Report

Basic Info

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Li, J.,2011(b)	A/T		Third-Stage Sample: for BPD, allele association P-value = 0....... Third-Stage Sample: for BPD, allele association P-value = 0.46, OR(95%CI)=0.91(0.71-1.16) More...	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
BCL9	B-cell CLL/lymphoma 9	1q21	1(1/0/0)

SNPs in LD with rs671056 (count: 15) View in gBrowse (chr1:147546461..147601562 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs649001	intron_variant	1.0[JPT]
rs17160433	intron_variant	1.0[JPT]
rs17160421	intron_variant	1.0[JPT]
rs17160437	intron_variant	1.0[JPT]
rs17160420	intron_variant	1.0[JPT]
rs17160431	intron_variant	1.0[JPT]
rs1390510	intron_variant	1.0[JPT]
rs17160434	intron_variant	1.0[JPT]
rs627219	intron_variant; non_coding_transcript_variant	1.0[JPT]
rs634309	intron_variant	0.864[CHB]; 1.0[JPT]
rs17160448	intron_variant	1.0[JPT]
rs17160422	intron_variant	1.0[JPT]
rs17160424	intron_variant	1.0[JPT]
rs10793690	intron_variant	1.0[JPT]
rs4950461	intron_variant	1.0[JPT]

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Li, J.,2011(b)	Third-Stage Sample:for SZ, allele association P-value = 0.63, OR(95%CI)=0.94(0.73-1.20);Combined Third-Stage Sample, allele association P-value = 0.48, OR(98%CI)=0.96(0.85-1.08)	No significant association was observed.	Negative

Overlap with MDD from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Li, J.,2011(b)	Third-Stage Sample:for MDD, allele association P-value = 0.78, OR(95%CI)=1.03(0.81-1.03)	No significant association was observed.	Negative