SNP Report
Basic Info
| Name |
rs671056
dbSNP
Ensembl
|
| Location |
chr1:147546461 - 147546461(1) |
| Variant Alleles |
T/A |
| Ancestral Allele |
T |
| Minor Allele |
A |
| Minor Allele Frequence |
0.0299521 |
| Functional Annotation |
intron_variant.
|
| Consequence to Transcript |
intron_variant(ENST00000234739) |
| No. of Studies |
1 (Positive: 0; Negative: 1; Trend: 0) |
| Source |
Literature |
| Overlap with SZ? |
YES
|
|---|
| Overlap with MDD? |
YES
|
|---|
SNP related studies (count: 1)
SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 15)
Overlap with SZ from cross-disorder studies (count: 1)
| Reference |
Statistical Result |
Description |
Result Category |
| Li, J.,2011(b) |
Third-Stage Sample:for SZ, allele association P-value = 0.63, OR(95%CI)=0.94(0.73-1.20);Combined Third-Stage Sample, allele association P-value = 0.48, OR(98%CI)=0.96(0.85-1.08) |
No significant association was observed. |
Negative |
Overlap with MDD from cross-disorder studies (count: 1)
| Reference |
Statistical Result |
Description |
Result Category |
| Li, J.,2011(b) |
Third-Stage Sample:for MDD, allele association P-value = 0.78, OR(95%CI)=1.03(0.81-1.03) |
No significant association was observed. |
Negative
|
