SNP Report

Basic Info

Name	rs662329 dbSNP Ensembl
Location	chr22:26307587 - 26307587(1)
Variant Alleles	G/T
Ancestral Allele	T
Minor Allele	G
Minor Allele Frequence	0.276558
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000248933, ENST00000343706, ENST00000360929, ENST00000402979, ENST00000403121, ENST00000404234, ENST00000529632, ENST00000629590)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Xu, C.,2012		C	Gene-gender interaction:OR = 0.86,P-value = 0.0017;Male:OR =...... Gene-gender interaction:OR = 0.86,P-value = 0.0017;Male:OR = 0.96,P-value = 0.74;Female:OR = 1.29,P-value = 0.0018,P-value corrected = 0.029 More...	16 SNPsshowedsignificantgenexgenderinteractionsinfluencingBD...... 16 SNPsshowedsignificantgenexgenderinteractionsinfluencingBD-I(P<0.01). More...	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
SEZ6L	seizure related 6 homolog (mouse)-like	22q12.1	1(1/0/0)

SNPs in LD with rs662329 (count: 4) View in gBrowse (chr22:26296162..26319427 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs641099	intron_variant	1.0[CEU]
rs714005	intron_variant	0.912[CEU]
rs581562	intron_variant	0.869[CEU]; 1.0[TSI]
rs3788377	intron_variant	0.956[CEU]; 1.0[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)