BDgene

SNP Report

Basic Info
Name rs6606854 dbSNP Ensembl
Location chr15:26914049 - 26914049(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.386981
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000335625, ENST00000355395, ENST00000400081, ENST00000541819, ENST00000555182, ENST00000557449); non_coding_transcript_variant(ENST00000557449)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Otani, K.,2005(a) C/T Chi-square test: for BPD, genotype P-value = 0.66, allele P-...... Chi-square test: for BPD, genotype P-value = 0.66, allele P-value = 0.84; for BPD1, genotype P-value = 0.64, allele P-value = 0.45; for BPD2, genotype P-value = 0.43, allele P-value = 0.33 More... No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GABRA5 gamma-aminobutyric acid (GABA) A receptor, alpha 5 15q12 6(6/0/0)
GABRB3 gamma-aminobutyric acid (GABA) A receptor, beta 3 15q12 3(1/2/0)

SNPs in LD with rs6606854 (count: 0) View in gBrowse (chr15:26914049..26914049 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)