BDgene

SNP Report

Basic Info
Name rs6540451 dbSNP Ensembl
Location chr1:208052012 - 208052012(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.353235
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000367033)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Hattori, E.,2009 In GWAS: Allelic P-value = 0.00749, Genotypic P-value = 0.01...... In GWAS: Allelic P-value = 0.00749, Genotypic P-value = 0.01142, Recessive P-value = 0.00488, HWE P-value = 0.84379; in Follow-up study: MAF=0.22, Allelic P-value = 0.04707, Allelic Q-value=0.59993, HWE P-value = 0.87161 More... Significant association was observed in both GWAS and Follow...... Significant association was observed in both GWAS and Follow-up study. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
PLXNA2 plexin A2 1q32.2 1(1/0/0)

SNPs in LD with rs6540451 (count: 10) View in gBrowse (chr1:208022636..208066988 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 10)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016