BDgene

SNP Report

Basic Info
Name rs6495504 dbSNP Ensembl
Location chr15:80474284 - 80474284(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.116414
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000303329, ENST00000525103, ENST00000527771, ENST00000529181, ENST00000531595, ENST00000533983, ENST00000622346); non_coding_transcript_variant(ENST00000529181, ENST00000531595)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Xu, W., 2014 G/A P-value=9.62E-05 P-value=9.62E-05 Top 132 SNPs (showing suggestive association to BD in our CA...... Top 132 SNPs (showing suggestive association to BD in our CAMH family cohort: p<0.0001). More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ARNT2 aryl-hydrocarbon receptor nuclear translocator 2 15q25.1 1(0/1/0)

SNPs in LD with rs6495504 (count: 9) View in gBrowse (chr15:80470463..80486105 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 9)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016