BDgene

SNP Report

Basic Info
Name rs6494849 dbSNP Ensembl
Location chr15:70188275 - 70188275(1)
Variant Alleles C/A/T
Ancestral Allele A
Minor Allele A
Minor Allele Frequence 0.255192
Functional Annotation upstream_gene_variant.
Consequence to Transcript upstream_gene_variant(ENST00000363346)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Scott, L. J.,2009 A/C NIMH/Pritzker: OR (95% CI)=1.24(1.00-1.54), P-value = 0.049;...... NIMH/Pritzker: OR (95% CI)=1.24(1.00-1.54), P-value = 0.049; GSK(reduced sample): OR (95% CI)=1.11(0.88-1.38), P-value = 0.38; WTCCC: OR (95% CI)=1.26(1.14-1.40), P-value = 0.00001; 3-study meta-analysis: OR (95% CI)=1.23(1.13-1.35), P-value = 0.0000065; Heterogeneity: I2%=0, P-value = 0.57 More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
RNU6-745P RNA, U6 small nuclear 745, pseudogene 15q23 Mapped by Literature SNP

SNPs in LD with rs6494849 (count: 0) View in gBrowse (chr15:70188275..70188275 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
To view this website normally, please make sure to allow Flash to run from the local filesystem in the security settings panel.
Last update: March 31, 2016