SNP Report

Basic Info

Name	rs6465903 dbSNP Ensembl
Location	chrCHR_HSCHR7_1_CTG4_4:103196480 - 103196480(-1)
Variant Alleles	A/C
Ancestral Allele	C
Minor Allele	A
Minor Allele Frequence	0.102835
Functional Annotation	intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000341533, ENST00000417955, ENST00000418294, ENST00000422589, ENST00000425379, ENST00000427257, ENST00000465647, ENST00000479761); NMD_transcript_variant(ENST00000422589); non_coding_transcript_variant(ENST00000479761, ENST00000631820, ENST00000631940, ENST00000632400, ENST00000632491, ENST00000633207, ENST00000631820, ENST00000631940, ENST00000632400, ENST00000632491, ENST00000633207)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Pisanu, C., 2013	A/C		logistic regression, P-value=0.026, OR=1.42 logistic regression, P-value=0.026, OR=1.42	Nominal association with BD or lithium response was not obse...... Nominal association with BD or lithium response was not observed in this study. More...	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
NAPEPLD	N-acyl phosphatidylethanolamine phospholipase D	7q22.1	1(1/0/0)

SNPs in LD with rs6465903 (count: 3) View in gBrowse (chrCHR_HSCHR7_1_CTG4_4:103043980..103232550 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs6465889	intron_variant; NMD_transcript_variant; non_coding_transcript_variant	1.0[CEU]
rs12113318	intron_variant; NMD_transcript_variant; non_coding_transcript_variant	1.0[CEU]; 0.931[TSI]
rs1061844	3_prime_UTR_variant; downstream_gene_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; intron_variant	1.0[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)