SNP Report

Basic Info
Name rs6465903 dbSNP Ensembl
Location chrCHR_HSCHR7_1_CTG4_4:103196480 - 103196480(-1)
Variant Alleles A/C
Ancestral Allele C
Minor Allele A
Minor Allele Frequence 0.102835
Functional Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000341533, ENST00000417955, ENST00000418294, ENST00000422589, ENST00000425379, ENST00000427257, ENST00000465647, ENST00000479761); NMD_transcript_variant(ENST00000422589); non_coding_transcript_variant(ENST00000479761, ENST00000631820, ENST00000631940, ENST00000632400, ENST00000632491, ENST00000633207, ENST00000631820, ENST00000631940, ENST00000632400, ENST00000632491, ENST00000633207)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Pisanu, C., 2013 A/C logistic regression, P-value=0.026, OR=1.42 logistic regression, P-value=0.026, OR=1.42 Nominal association with BD or lithium response was not obse...... Nominal association with BD or lithium response was not observed in this study. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
NAPEPLD N-acyl phosphatidylethanolamine phospholipase D 7q22.1 1(1/0/0)

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 3)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)