SNP Report

Basic Info

Name	rs6437143 dbSNP Ensembl
Location	chr2:158175044 - 158175044(1)
Variant Alleles	A/G
Ancestral Allele	A
Minor Allele	A
Minor Allele Frequence	0.0261581
Functional Annotation	intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000283233, ENST00000409187, ENST00000412781, ENST00000448656, ENST00000454257); NMD_transcript_variant(ENST00000448656, ENST00000454257); non_coding_transcript_variant(ENST00000412781)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Xu, W., 2014	A/G		P-value=1.54E-05 P-value=1.54E-05	Top 132 SNPs (showing suggestive association to BD in our CA...... Top 132 SNPs (showing suggestive association to BD in our CAMH family cohort: p<0.0001). More...	Negative

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CCDC148-AS1	CCDC148 antisense RNA 1	2q24.1	Mapped by Literature SNP
CCDC148	coiled-coil domain containing 148	2q24.1	1(0/1/0)

SNPs in LD with rs6437143 (count: 0) View in gBrowse (chr2:158175044..158175044 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)