SNP Report

Basic Info
Name rs6437143 dbSNP Ensembl
Location chr2:158175044 - 158175044(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele A
Minor Allele Frequence 0.0261581
Functional Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000283233, ENST00000409187, ENST00000412781, ENST00000448656, ENST00000454257); NMD_transcript_variant(ENST00000448656, ENST00000454257); non_coding_transcript_variant(ENST00000412781)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Xu, W., 2014 A/G P-value=1.54E-05 P-value=1.54E-05 Top 132 SNPs (showing suggestive association to BD in our CA...... Top 132 SNPs (showing suggestive association to BD in our CAMH family cohort: p<0.0001). More... Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CCDC148-AS1 CCDC148 antisense RNA 1 2q24.1 Mapped by Literature SNP
CCDC148 coiled-coil domain containing 148 2q24.1 1(0/1/0)

SNPs in LD with rs6437143 (count: 0) View in gBrowse (chr2:158175044..158175044 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)