SNP Report

Basic Info
Name rs6079468 dbSNP Ensembl
Location chr20:14517750 - 14517750(1)
Variant Alleles A/C
Ancestral Allele A
Minor Allele C
Minor Allele Frequence 0.124401
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000217246, ENST00000463861, ENST00000490428, ENST00000494602); non_coding_transcript_variant(ENST00000463861, ENST00000490428, ENST00000494602)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Chen, D. T.,2011 C Meta-analysis results by ancestry: European and Asian-ancest...... Meta-analysis results by ancestry: European and Asian-ancestry phase I samples: Fixed effects P-value = 4.50E-07, Random effects P-value = 2.11E-05, I2=33.08, Q test=7.47, Q test P-value = 0.188; European-ancestry phase I and phase II samples: Fixed effects P-value = 7.52E-07, Random effects P-value = 0.00014, I2=0, Q test=3.95, Q test P-value = 0.413 More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
MACROD2 MACRO domain containing 2 20p12.1 2(0/1/1)

SNPs in LD with rs6079468 (count: 0) View in gBrowse (chr20:14517750..14517750 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)