BDgene

SNP Report

Basic Info
Name rs6039769 dbSNP Ensembl
Location chr20:10218306 - 10218306(1)
Variant Alleles A/C
Ancestral Allele C
Minor Allele A
Minor Allele Frequence 0.186901
Functional Annotation intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000421143, ENST00000426491, ENST00000451151, ENST00000453544, ENST00000603542, ENST00000605592); non_coding_transcript_variant(ENST00000421143, ENST00000426491, ENST00000451151, ENST00000453544, ENST00000603542, ENST00000605592); upstream_gene_variant(ENST00000254976, ENST00000304886, ENST00000430336)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Etain, B., 2010 C/A A P-value = 0.005, OR=0.62 between subjects affected with earl...... P-value = 0.005, OR=0.62 between subjects affected with early-onset bipolar disorder (N= 197) and healthy controls (N= 136). Genotypic association P-value = 0.017 More... differed significantly between the early-onset and control g...... differed significantly between the early-onset and control groups; remained significant in early-onset subgroup after correction for multiple testing. Significant genotypic association was observed only for SNP4. More... Positive

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SNAP25-AS1 SNAP25 antisense RNA 1 20p12.2 Mapped by Literature SNP
SNAP25 synaptosomal-associated protein, 25kDa 20p12-p11.2 2(2/0/0)

SNPs in LD with rs6039769 (count: 4) View in gBrowse (chr20:10202370..10218306 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 4)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)