SNP Report

Basic Info
Name rs602435 dbSNP Ensembl
Location chr11:107532792 - 107532792(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.0523163
Functional Annotation intron_variant; NMD_transcript_variant.
Consequence to Transcript intron_variant(ENST00000260318, ENST00000389568, ENST00000393100, ENST00000417449, ENST00000428149, ENST00000429370); NMD_transcript_variant(ENST00000260318, ENST00000393100)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Xu, W., 2014 T/C P-value=5.7E-05 P-value=5.7E-05 Top 132 SNPs (showing suggestive association to BD in our CA...... Top 132 SNPs (showing suggestive association to BD in our CAMH family cohort: p<0.0001). More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ALKBH8 alkB, alkylation repair homolog 8 (E. coli) 11q22.3 1(0/1/0)

SNPs in LD with rs602435 (count: 0) View in gBrowse (chr11:107532792..107532792 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)