BDgene

SNP Report

Basic Info
Name rs6023059 dbSNP Ensembl
Location chr20:38109369 - 38109369(1)
Variant Alleles T/C
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.360623
Functional Annotation intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000614670, ENST00000618318); non_coding_transcript_variant(ENST00000618318); upstream_gene_variant(ENST00000615357)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Graae, L.,2012 C/T Association analysis: for female, P-value corrected with Bon...... Association analysis: for female, P-value corrected with Bonferroni correction=0.023; ; odds ratio (OR) 0.681, 95% confidence interval (CI) 0.570-0.814 More... Significant association was observed in BD. Significant association was observed in BD. Positive

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
RPRD1B regulation of nuclear pre-mRNA domain containing 1B 20q11.23 Mapped by Literature SNP
TGM2 transglutaminase 2 20q12 1(1/0/0)

SNPs in LD with rs6023059 (count: 9) View in gBrowse (chr20:37983262..38109720 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 9)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016