SNP Report

Basic Info

Name	rs5746136 dbSNP Ensembl
Location	chr6:159682052 - 159682052(1)
Variant Alleles	C/T
Ancestral Allele	C
Minor Allele	T
Minor Allele Frequence	0.305711
Functional Annotation	3_prime_UTR_variant; downstream_gene_variant; intron_variant; NMD_transcript_variant.
Consequence to Transcript	3_prime_UTR_variant(ENST00000538183, ENST00000546260); downstream_gene_variant(ENST00000337404, ENST00000401980, ENST00000444946, ENST00000535459, ENST00000535561, ENST00000537657, ENST00000540491, ENST00000541573, ENST00000545162); intron_variant(ENST00000367054, ENST00000367055, ENST00000546087); NMD_transcript_variant(ENST00000546260)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Fullerton, J. M.,2010		T	Allelic association: X²=0.083, P-value = 0.774, O...... Allelic association: X²=0.083, P-value = 0.774, OR=1.034 for broad model; X²=0.118, P-value = 0.731, OR=1.045 More...	No significant association was observed in BD. No significant association was observed in BD.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
SOD2	superoxide dismutase 2, mitochondrial	6q25	2(1/1/0)

SNPs in LD with rs5746136 (count: 0) View in gBrowse (chr6:159682052..159682052 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)