SNP Report

Basic Info
Name rs5746136 dbSNP Ensembl
Location chr6:159682052 - 159682052(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.305711
Functional Annotation 3_prime_UTR_variant; downstream_gene_variant; intron_variant; NMD_transcript_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000538183, ENST00000546260); downstream_gene_variant(ENST00000337404, ENST00000401980, ENST00000444946, ENST00000535459, ENST00000535561, ENST00000537657, ENST00000540491, ENST00000541573, ENST00000545162); intron_variant(ENST00000367054, ENST00000367055, ENST00000546087); NMD_transcript_variant(ENST00000546260)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Fullerton, J. M.,2010 T Allelic association: X2=0.083, P-value = 0.774, O...... Allelic association: X2=0.083, P-value = 0.774, OR=1.034 for broad model; X2=0.118, P-value = 0.731, OR=1.045 More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SOD2 superoxide dismutase 2, mitochondrial 6q25 2(1/1/0)

SNPs in LD with rs5746136 (count: 0) View in gBrowse (chr6:159682052..159682052 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)