SNP Report

Basic Info

Name	rs5742620 dbSNP Ensembl
Location	chr12:102475822 - 102475822(1)
Variant Alleles	G/T
Ancestral Allele	G
Minor Allele	T
Minor Allele Frequence	0.0213658
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000307046, ENST00000337514, ENST00000392904, ENST00000392905, ENST00000424202, ENST00000456098)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Pereira, A. C.,2011	C/A		X² tests: X²=3.724, P-value = 0.053 X² tests: X²=3.724, P-value = 0.053	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
IGF1	insulin-like growth factor 1 (somatomedin C)	12q23.2	1(1/0/0)

SNPs in LD with rs5742620 (count: 1) View in gBrowse (chr12:102459465..102475822 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs11831436		intron_variant; non_coding_transcript_variant	0.825[CEU]; 0.884[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)