BDgene

SNP Report

Basic Info
Name rs56173829 dbSNP Ensembl
Location chr3:7740807 - 7740807(1)
Variant Alleles A/T
Ancestral Allele A
Minor Allele T
Minor Allele Frequence 0.0071885
Functional Annotation 3_prime_UTR_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000357716, ENST00000486284)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Kandaswamy R., 2014 A/T MAF=0.01; P-value=0.035; OR=0.48, 95%CI=0.24-0.96 MAF=0.01; P-value=0.035; OR=0.48, 95%CI=0.24-0.96 Significant association was observed. Significant association was observed. Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GRM7 glutamate receptor, metabotropic 7 3p26-p25 3(2/1/0)

SNPs in LD with rs56173829 (count: 0) View in gBrowse (chr3:7740807..7740807 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016