SNP Report

Basic Info
Name |
rs55909231
dbSNP
Ensembl
|
Location |
chr19:51001974 - 51001974(1) |
Variant Alleles |
T/C |
Ancestral Allele |
T |
Minor Allele |
C |
Minor Allele Frequence |
0.0245607 |
Functional Annotation |
downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant.
|
Consequence to Transcript |
downstream_gene_variant(ENST00000544410, ENST00000594211); intron_variant(ENST00000250366, ENST00000594512, ENST00000595238, ENST00000599166, ENST00000600767); NMD_transcript_variant(ENST00000250366, ENST00000599166); non_coding_transcript_variant(ENST00000594512); upstream_gene_variant(ENST00000291726, ENST00000320838, ENST00000347619, ENST00000391806, ENST00000593490, ENST00000594669, ENST00000594914, ENST00000598195, ENST00000599710) |
No. of Studies |
1 (Positive: 0; Negative: 1; Trend: 0) |
Source |
Literature |
Overlap with SZ? |
YES
|
Overlap with MDD? |
YES
|

SNP related studies (count: 1)

SNP related genes (count: 2)

Overlap with SZ from cross-disorder studies (count: 1)
Reference |
Statistical Result |
Description |
Result Category |
Izumi, A., 2008 |
Genotype frequency (df=2) X2=0.21, P value=0.90. Allele frequency (df=1) X2=0.11, P value=0.74 in Patients with SZ vs controls. |
There was no significant difference in genotype or allele distribution for any SNP between patients and controls for schizophrenia or major depression. |
Negative |

Overlap with MDD from cross-disorder studies (count: 1)
Reference |
Statistical Result |
Description |
Result Category |
Izumi, A., 2008 |
Genotype frequency (df=2) X2=4.94, P value=0.08 . Allele frequency (df=1) X2=2.48, P value=0.12 in Patients with MD vs controls. |
There was no significant difference in genotype or allele distribution for any SNP between patients and controls for schizophrenia or major depression. |
Negative
|