SNP Report

Basic Info

Name	rs532967 dbSNP Ensembl
Location	chr12:117294534 - 117294534(1)
Variant Alleles	A/G
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.158546
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000317775, ENST00000338101, ENST00000344089, ENST00000618760)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Yosifova, A.,2009	A/G		Allelic association: 1st screening: P-value = 0.1, 2nd scree...... Allelic association: 1st screening: P-value = 0.1, 2nd screening: P-value = 0.00084, total: P-value = 0.33 More...	Significant association was observed in 1st screening and 2n...... Significant association was observed in 1st screening and 2nd screening. More...	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
NOS1	nitric oxide synthase 1 (neuronal)	12q24.22	8(2/5/1)

SNPs in LD with rs532967 (count: 2) View in gBrowse (chr12:117286623..117310595 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs9658350		intron_variant	0.817[CEU]
rs499813		intron_variant	0.929[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)