BDgene

SNP Report

Basic Info
Name rs499167 dbSNP Ensembl
Location chr15:34056137 - 34056137(1)
Variant Alleles A/C
Ancestral Allele A
Minor Allele A
Minor Allele Frequence 0.363419
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000383263, ENST00000557872, ENST00000560035)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Shi, J., 2007 A/C TDT P-value = 1 of Allelic Association With Bipolar Disorder...... TDT P-value = 1 of Allelic Association With Bipolar Disorder in the Combined Sample More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CHRM5 cholinergic receptor, muscarinic 5 15q26 1(0/1/0)

SNPs in LD with rs499167 (count: 15) View in gBrowse (chr15:34056137..34100607 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 15)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)