BDgene

SNP Report

Basic Info
Name rs4939921 dbSNP Ensembl
Location chr18:49935958 - 49935958(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.146166
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000285039)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Sklar, P., 2008 G/A CMH (Cochran-Mantel-Haenszel) P-value = 1.66E-07, allelic P-...... CMH (Cochran-Mantel-Haenszel) P-value = 1.66E-07, allelic P-value = 5.02E-07, OR=1.51, pSNP test P-value = 5.09E-07, pHAP test P-value = 2.04E-08, r2=0.42 More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
MYO5B myosin VB 18q 2(1/0/1)

SNPs in LD with rs4939921 (count: 1) View in gBrowse (chr18:49935958..49953121 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 1)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016