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SNP Report
Name | rs4935752 dbSNP Ensembl | ||
---|---|---|---|
Location | chr11:120818410 - 120818410(1) | ||
Variant Alleles | A/C | ||
Ancestral Allele | A | ||
Minor Allele | C | ||
Minor Allele Frequence | 0.281949 | ||
Functional Annotation | downstream_gene_variant; intron_variant; non_coding_transcript_variant. | ||
Consequence to Transcript | downstream_gene_variant(ENST00000526536); intron_variant(ENST00000438375, ENST00000527524, ENST00000533291); non_coding_transcript_variant(ENST00000533291) | ||
No. of Studies | 1 (Positive: 1; Negative: 0; Trend: 0) | ||
Source | Literature | ||
Overlap with SZ? | YES | ||
Overlap with MDD? | NO |
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.
Reference | Statistical Result | Description | Result Category |
---|---|---|---|
Pickard, B. S., 2006 | P-value = 0.001 between SCZ cases and controls; P-value = 0.022 between all cases and controls; Best global P-value (permutation corrected)=0.03 | showed significant association with schizophrenia; SNP 15 remained significantly associated with schizophrenia after permutation analysis to counter multiple testing errors | Positive |