SNP Report

Basic Info

Name	rs4862860 dbSNP Ensembl
Location	chr4:188101266 - 188101266(1)
Variant Alleles	A/G
Ancestral Allele	A
Minor Allele	G
Minor Allele Frequence	0.163339
Functional Annotation	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000394461, ENST00000502707); intron_variant(ENST00000326754, ENST00000511771, ENST00000512729); non_coding_transcript_variant(ENST00000511771); upstream_gene_variant(ENST00000503141, ENST00000503475)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Blair, I. P.,2005	C/T		X² goodness of fit tests: MAF=0.02, Genotype P-va...... X² goodness of fit tests: MAF=0.02, Genotype P-value = 0.53, Allele P-value = 0.53 More...	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
TRIML2	tripartite motif family-like 2	4q35.2	1(0/1/0)

SNPs in LD with rs4862860 (count: 3) View in gBrowse (chr4:188095904..188108911 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs13123649	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant	0.863[CEU]; 0.836[TSI]
rs4862858	downstream_gene_variant; intron_variant; NMD_transcript_variant	1.0[CEU]; 1.0[TSI]
rs4862857	downstream_gene_variant; intron_variant; NMD_transcript_variant	1.0[CEU]; 1.0[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)