BDgene

SNP Report

Basic Info
Name rs4822697 dbSNP Ensembl
Location chr22:26245269 - 26245269(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.246406
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000248933, ENST00000343706, ENST00000360929, ENST00000404234, ENST00000414989, ENST00000529632, ENST00000629590); non_coding_transcript_variant(ENST00000414989)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Xu, C.,2012 A Gene-gender interaction:OR = 0.87,P-value = 0.0046;Male:OR =...... Gene-gender interaction:OR = 0.87,P-value = 0.0046;Male:OR = 0.9,P-value = 0.32;Female:OR = 0.77,P-value = 0.01,P-value corrected = 0.16 More... 16 SNPsshowedsignificantgenexgenderinteractionsinfluencingBD...... 16 SNPsshowedsignificantgenexgenderinteractionsinfluencingBD-I(P<0.01). More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SEZ6L seizure related 6 homolog (mouse)-like 22q12.1 1(1/0/0)

SNPs in LD with rs4822697 (count: 7) View in gBrowse (chr22:26244934..26257648 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 7)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016