BDgene

SNP Report

Basic Info
Name rs4779656 dbSNP Ensembl
Location chr15:34032402 - 34032402(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.090655
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000306730, ENST00000383263, ENST00000557872, ENST00000560035)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Shi, J., 2007 A/G TDT P-value = 0.52 of Allelic Association With Bipolar Disor...... TDT P-value = 0.52 of Allelic Association With Bipolar Disorder in the Combined Sample More... Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
AVEN apoptosis, caspase activation inhibitor 15q13.1 Mapped by Literature SNP
CHRM5 cholinergic receptor, muscarinic 5 15q26 1(0/1/0)

SNPs in LD with rs4779656 (count: 18) View in gBrowse (chr15:33999790..34081143 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 18)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)