BDgene

SNP Report

Basic Info
Name rs4775413 dbSNP Ensembl
Location chr15:61547904 - 61547904(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.329872
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000559783); non_coding_transcript_variant(ENST00000559783)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Saito T., 2014 T/C First-set screening: P-valuecorrected=1, P-value=...... First-set screening: P-valuecorrected=1, P-value=0.0731, OR=1.13, 95%CI=0.99-1.29 More... No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CYCSP38 cytochrome c, somatic pseudogene 38 15q22.2 1(0/1/0)

SNPs in LD with rs4775413 (count: 19) View in gBrowse (chr15:61539481..61588601 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 19)


Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Saito T., 2014 First-set screening: P-valuecorrected=0.65, P-value=0.0156, OR=1.18, 95%CI=1.03-1.34 Significant association was observed. Positive

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016