BDgene

SNP Report

Basic Info
Name rs4772152 dbSNP Ensembl
Location chr13:98869502 - 98869502(1)
Variant Alleles A/T
Ancestral Allele A
Minor Allele T
Minor Allele Frequence 0.450879
Functional Annotation intron_variant; NMD_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000339416, ENST00000376460, ENST00000427887, ENST00000442173, ENST00000448493, ENST00000627024, ENST00000630992); NMD_transcript_variant(ENST00000339416, ENST00000630992); upstream_gene_variant(ENST00000619393)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Detera-Wadleigh, S. D., 2007 FBAT-e P-value = 0.7407 in NIMH1-2, FBAT-e P-value = 0.2866 ...... FBAT-e P-value = 0.7407 in NIMH1-2, FBAT-e P-value = 0.2866 in NIMH3, FBAT-e P-value = 0.1181 in NIMH4 More... no significant over-transmission of any alleles was detected no significant over-transmission of any alleles was detected Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
DOCK9 dedicator of cytokinesis 9 13q32.3 1(1/0/0)

SNPs in LD with rs4772152 (count: 0) View in gBrowse (chr13:98869502..98869502 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)