BDgene

SNP Report

Basic Info
Name rs45602133 dbSNP Ensembl
Location chr10:62813552 - 62813552(1)
Variant Alleles T/G
Ancestral Allele T
Minor Allele G
Minor Allele Frequence 0.076877
Functional Annotation downstream_gene_variant; synonymous_variant.
Consequence to Transcript downstream_gene_variant(ENST00000493899, ENST00000637191); synonymous_variant(ENST00000242480, ENST00000411732, ENST00000439032, LRG_239t1)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Kim, S. H.,2011 T/G For BD, chi-square tests: allele, OR=1.059, X2=0....... For BD, chi-square tests: allele, OR=1.059, X2=0.1213, P-value = 0.7276, P-value(permutation)=0.9994; Fisher's exact test, genotype, X2=0.4186, P-value = 0.8112 More... Significant associations were found in both allele and genot...... Significant associations were found in both allele and genotype association. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
EGR2 early growth response 2 10q21.1 3(1/2/0)

SNPs in LD with rs45602133 (count: 0) View in gBrowse (chr10:62813552..62813552 )

Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Kim, S. H.,2011 For SZ, chi-square tests:allele, OR=0.846, X2=0.7658, P-value = 0.3815, P-value(permutation)=0.9064;Fisher's exact test, genotype, X2=1.1279, P-value = 0.569 No significant association was observed. Negative

Overlap with MDD from cross-disorder studies (count: 0)