BDgene

SNP Report

Basic Info
Name rs4455070 dbSNP Ensembl
Location chr18:65487125 - 65487125(1)
Variant Alleles A/T
Ancestral Allele A
Minor Allele T
Minor Allele Frequence 0.388379
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Sklar, P., 2008 T/A CMH (Cochran-Mantel-Haenszel) P-value = 3.26E-05, allelic P-...... CMH (Cochran-Mantel-Haenszel) P-value = 3.26E-05, allelic P-value = 5.60E-05, OR=1.22, pSNP test P-value = 4.10E-05, pHAP test P-value = 1.34E-05, r2=0.64 More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CDH7 cadherin 7, type 2 18q22.1 1(0/0/1)

SNPs in LD with rs4455070 (count: 47) View in gBrowse (chr18:65445147..65529332 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 47)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016