BDgene

SNP Report

Basic Info
Name rs4131348 dbSNP Ensembl
Location chr12:71930699 - 71930699(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.180711
Functional Annotation downstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000550746)
No. of Studies 2 (Positive: 1; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? YES

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Yosifova, A.,2009 C/T Allelic association: P-value = 0.14 Allelic association: P-value = 0.14 No significant association was observed No significant association was observed Negative
Van Den Bogaert, A., 2006 (a) C/T genotypic P-value = 0.004, allelic P-value = 0.004 genotypic P-value = 0.004, allelic P-value = 0.004 In the sample of patients with BP disorder and controls, sig...... In the sample of patients with BP disorder and controls, significant association was observed because of a decrease of the C allele of rs4131348 in the patients with BP disorder, from 21.9% to 14.6% (P=.004). More... Positive

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
TBC1D15 TBC1 domain family, member 15 12q15 Mapped by Literature SNP
TPH2 tryptophan hydroxylase 2 12q15 13(10/3/0)

SNPs in LD with rs4131348 (count: 3) View in gBrowse (chr12:71930054..71933242 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 3)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Van Den Bogaert, A., 2006 (a) genotypic P-value = 0.54, allelic P-value = 0.54 Negative