BDgene

SNP Report

Basic Info
Name rs40245 dbSNP Ensembl
Location chr7:21430918 - 21430918(1)
Variant Alleles A/T
Ancestral Allele T
Minor Allele A
Minor Allele Frequence 0.196286
Functional Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000440636); intron_variant(ENST00000222584, ENST00000432066, ENST00000448246); NMD_transcript_variant(ENST00000448246)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Zhou, X.,2009 T/A Allelic association: Caucasian Families for Bipolar Disorder...... Allelic association: Caucasian Families for Bipolar Disorder: TDT: Risk allele is A, MAF=0.38, P-value = 0.273; Chinese Case-Controls for Bipolar Disorder: Risk allele is A, MAF=0.06, P-value = 0.009 More... Significant association was observed in Chinese Case-Control...... Significant association was observed in Chinese Case-Controls for Bipolar Disorder. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SP4 Sp4 transcription factor 7p15 1(1/0/0)

SNPs in LD with rs40245 (count: 20) View in gBrowse (chr7:21429022..21513377 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 20)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016