BDgene

SNP Report

Basic Info
Name rs3885617 dbSNP Ensembl
Location chr13:102694092 - 102694092(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele A
Minor Allele Frequence 0.492612
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000267273)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Hattori, E.,2009 In GWAS: Allelic P-value = 0.00438, Genotypic P-value = 0.01...... In GWAS: Allelic P-value = 0.00438, Genotypic P-value = 0.01509, Recessive P-value = 0.01848, HWE P-value = 0.84423; in Follow-up study: MAF=0.31, Allelic P-value = 0.02081, Allelic Q-value=0.5154, HWE P-value = 0.66324 More... Significant association was observed in both GWAS and Follow...... Significant association was observed in both GWAS and Follow-up study. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
METTL21C methyltransferase like 21C 13q33.1 1(1/0/0)

SNPs in LD with rs3885617 (count: 1) View in gBrowse (chr13:102694092..102694309 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 1)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016