BDgene

SNP Report

Basic Info
Name rs3844347 dbSNP Ensembl
Location chr10:62372033 - 62372033(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele G
Minor Allele Frequence 0.438299
Functional Annotation upstream_gene_variant.
Consequence to Transcript upstream_gene_variant(ENST00000395254, ENST00000395255, ENST00000410046, ENST00000421210, ENST00000466727)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Anitha, A.,2009 A/G Fisher's Exact test: Allelic association P-value = 0.489 ; G...... Fisher's Exact test: Allelic association P-value = 0.489 ; Genotypic association P-value = 0.565 More... No significant association was observed No significant association was observed Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ZNF365 zinc finger protein 365 10q21.2 Mapped by Literature SNP

SNPs in LD with rs3844347 (count: 35) View in gBrowse (chr10:62325942..62415679 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 35)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016