SNP Report

Basic Info

Name	rs3813355 dbSNP Ensembl
Location	chr6:132589473 - 132589473(1)
Variant Alleles	G/A
Ancestral Allele	A
Minor Allele	G
Minor Allele Frequence	0.327077
Functional Annotation	downstream_gene_variant; synonymous_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000454843); synonymous_variant(ENST00000258034)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Liu, C., 2007	A/G		TDT P-value = 0.58 in CNG+NIMH waves I+2 TDT P-value = 0.58 in CNG+NIMH waves I+2		Negative

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
TAAR5	trace amine associated receptor 5	6q23.2	Mapped by Literature SNP
TAAR4P	trace amine associated receptor 4, pseudogene	6q23.2	1(1/0/0)

SNPs in LD with rs3813355 (count: 1) View in gBrowse (chr6:132589473..132606206 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs6904470		downstream_gene_variant	0.911[CEU]; 0.884[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)