SNP Report

Basic Info
Name rs3792797 dbSNP Ensembl
Location chr5:151022330 - 151022330(1)
Variant Alleles A/C
Ancestral Allele A
Minor Allele A
Minor Allele Frequence 0.298522
Functional Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000625178); intron_variant(ENST00000388825, ENST00000517973, ENST00000519214, ENST00000521650, ENST00000521722, ENST00000614343, ENST00000622181); NMD_transcript_variant(ENST00000519214); non_coding_transcript_variant(ENST00000521722); upstream_gene_variant(ENST00000520059, ENST00000520597, ENST00000521632, ENST00000624359)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Fullerton, J. M.,2010 A Allelic association: X2=1.932, P-value = 0.165, O...... Allelic association: X2=1.932, P-value = 0.165, OR=1.216 for broad model; X2=1.048, P-value = 0.306, OR=1.172 More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GPX3 glutathione peroxidase 3 5q33.1 1(1/0/0)

SNPs in LD with rs3792797 (count: 0) View in gBrowse (chr5:151022330..151022330 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)