SNP Report

Basic Info

Name	rs3792797 dbSNP Ensembl
Location	chr5:151022330 - 151022330(1)
Variant Alleles	A/C
Ancestral Allele	A
Minor Allele	A
Minor Allele Frequence	0.298522
Functional Annotation	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000625178); intron_variant(ENST00000388825, ENST00000517973, ENST00000519214, ENST00000521650, ENST00000521722, ENST00000614343, ENST00000622181); NMD_transcript_variant(ENST00000519214); non_coding_transcript_variant(ENST00000521722); upstream_gene_variant(ENST00000520059, ENST00000520597, ENST00000521632, ENST00000624359)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Fullerton, J. M.,2010		A	Allelic association: X²=1.932, P-value = 0.165, O...... Allelic association: X²=1.932, P-value = 0.165, OR=1.216 for broad model; X²=1.048, P-value = 0.306, OR=1.172 More...	No significant association was observed in BD. No significant association was observed in BD.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
GPX3	glutathione peroxidase 3	5q33.1	1(1/0/0)

SNPs in LD with rs3792797 (count: 0) View in gBrowse (chr5:151022330..151022330 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)