BDgene

SNP Report

Basic Info
Name rs3782221 dbSNP Ensembl
Location chr12:117358076 - 117358076(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.320487
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000317775, ENST00000477584, ENST00000549189, ENST00000618760); non_coding_transcript_variant(ENST00000477584, ENST00000549189)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Yosifova, A.,2009 A/G Allelic association: P-value = 0.23 Allelic association: P-value = 0.23 No significant association was observed No significant association was observed Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
NOS1 nitric oxide synthase 1 (neuronal) 12q24.22 8(2/5/1)

SNPs in LD with rs3782221 (count: 4) View in gBrowse (chr12:117343586..117358076 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 4)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)