BDgene

SNP Report

Basic Info
Name rs3771856 dbSNP Ensembl
Location chr2:75186888 - 75186888(1)
Variant Alleles G/A
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.441294
Functional Annotation intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000305249, ENST00000409848); non_coding_transcript_exon_variant(ENST00000604271); non_coding_transcript_variant(ENST00000604271)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Sharp S.I., 2014 G/A P-value=0.59, OR=0.95, 95%CI=0.79-1.15 P-value=0.59, OR=0.95, 95%CI=0.79-1.15 No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
TACR1 tachykinin receptor 1 2p13.1-p12 3(3/0/0)

SNPs in LD with rs3771856 (count: 6) View in gBrowse (chr2:75183931..75213474 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 6)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)