SNP Report

Basic Info

Name	rs3756179 dbSNP Ensembl
Location	chr4:8590980 - 8590980(1)
Variant Alleles	T/C
Ancestral Allele	C
Minor Allele	C
Minor Allele Frequence	0.390375
Functional Annotation	downstream_gene_variant; intron_variant; NMD_transcript_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000382487, ENST00000504255, ENST00000509216); intron_variant(ENST00000514302); NMD_transcript_variant(ENST00000514302); upstream_gene_variant(ENST00000315782, ENST00000360986, ENST00000382480, ENST00000504070, ENST00000506287, ENST00000514602, ENST00000514875, ENST00000515606)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Underwood, S. L., 2006	C/T		no P-value given in the text no P-value given in the text	No single-marker association was detected with any other SNP...... No single-marker association was detected with any other SNP, in the males or in the individuals with BPAD. More...	Negative

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CPZ	carboxypeptidase Z	4p16.1	Mapped by Literature SNP
GPR78	G protein-coupled receptor 78	4p16.1	2(2/0/0)

SNPs in LD with rs3756179 (count: 0) View in gBrowse (chr4:8590980..8590980 )

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Underwood, S. L., 2006	no P-value given in the text	No single-marker association was detected.	Negative

Overlap with MDD from cross-disorder studies (count: 0)