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SNP Report
Basic Info
| Name | rs3734381 dbSNP Ensembl | ||
|---|---|---|---|
| Location | chr6:118566140 - 118566140(1) | ||
| Variant Alleles | T/C | ||
| Ancestral Allele | T | ||
| Minor Allele | C | ||
| Minor Allele Frequence | 0.436901 | ||
| Functional Annotation | missense_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant.
Polyphen Annotation: benign(ENST00000360290, ENST00000368488, ENST00000368491, ENST00000392500, ENST00000419517, ENST00000434604) SIFT Annotation: tolerated(ENST00000360290, ENST00000368488, ENST00000368491, ENST00000392500, ENST00000419517, ENST00000434604) |
||
| Consequence to Transcript | missense_variant(ENST00000360290, ENST00000368488, ENST00000368491, ENST00000392500, ENST00000419517, ENST00000434604); non_coding_transcript_exon_variant(ENST00000462101, ENST00000472713, ENST00000476150, ENST00000483035); non_coding_transcript_variant(ENST00000462101, ENST00000472713, ENST00000476150, ENST00000483035) | ||
| No. of Studies | 1 (Positive: 1; Negative: 0; Trend: 0) | ||
| Source | Literature | ||
| Overlap with SZ? | NO | ||
| Overlap with MDD? | NO | ||
SNP related studies (count: 1)
SNP related genes (count: 2)
| Approved Symbol | Approved Name | Location | No. of Studies (Positive/Negative/Trend)  |
|---|---|---|---|
| PLN | phospholamban | 6q22.1 | Mapped by LD-proxy |
| CEP85L | centrosomal protein 85kDa-like | 6q22.31 | 1(1/0/0) |
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 44)
Overlap with SZ from cross-disorder studies (count: 0)
Overlap with MDD from cross-disorder studies (count: 0)