SNP Report

Basic Info

Name	rs319331 dbSNP Ensembl
Location	chr7:95915051 - 95915051(1)
Variant Alleles	G/A
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.219249
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000324972, ENST00000359388, ENST00000437599, ENST00000447467, ENST00000457059, ENST00000519371, ENST00000537881, ENST00000630942); non_coding_transcript_variant(ENST00000519371)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Hattori, E.,2009			In GWAS: Allelic P-value = 0.08806, Genotypic P-value = 0.01...... In GWAS: Allelic P-value = 0.08806, Genotypic P-value = 0.01659, Recessive P-value = 0.00479, HWE P-value = 0.04965; in Follow-up study: MAF=0.25, Allelic P-value = 0.02444, Allelic Q-value=0.5154, HWE P-value = 0.95245 More...	Significant association was observed in both GWAS and Follow...... Significant association was observed in both GWAS and Follow-up study. More...	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
DYNC1I1	dynein, cytoplasmic 1, intermediate chain 1	7q21.3	1(1/0/0)

SNPs in LD with rs319331 (count: 7) View in gBrowse (chr7:95887257..95922802 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs319325	intron_variant; non_coding_transcript_variant	0.948[CHB]; 0.946[CHD]
rs319327	intron_variant; non_coding_transcript_variant	0.947[CHB]; 0.946[CHD]
rs10237844	intron_variant; non_coding_transcript_variant	0.945[CHB]; 0.84[JPT]
rs6465485	intron_variant; non_coding_transcript_variant	0.812[CHB]; 0.892[CHD]
rs319328	intron_variant; non_coding_transcript_variant	0.891[CHB]
rs319333	intron_variant; non_coding_transcript_variant	1.0[CHB]; 0.973[CHD]; 1.0[JPT]
rs319300	intron_variant; non_coding_transcript_variant	1.0[CHB]; 0.918[CHD]; 0.92[JPT]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)