BDgene

SNP Report

Basic Info
Name rs319331 dbSNP Ensembl
Location chr7:95915051 - 95915051(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.219249
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000324972, ENST00000359388, ENST00000437599, ENST00000447467, ENST00000457059, ENST00000519371, ENST00000537881, ENST00000630942); non_coding_transcript_variant(ENST00000519371)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Hattori, E.,2009 In GWAS: Allelic P-value = 0.08806, Genotypic P-value = 0.01...... In GWAS: Allelic P-value = 0.08806, Genotypic P-value = 0.01659, Recessive P-value = 0.00479, HWE P-value = 0.04965; in Follow-up study: MAF=0.25, Allelic P-value = 0.02444, Allelic Q-value=0.5154, HWE P-value = 0.95245 More... Significant association was observed in both GWAS and Follow...... Significant association was observed in both GWAS and Follow-up study. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
DYNC1I1 dynein, cytoplasmic 1, intermediate chain 1 7q21.3 1(1/0/0)

SNPs in LD with rs319331 (count: 7) View in gBrowse (chr7:95887257..95922802 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 7)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)