SNP Report

Basic Info

Name	rs3132780 dbSNP Ensembl
Location	chr11:120749450 - 120749450(1)
Variant Alleles	A/G
Ancestral Allele	A
Minor Allele	G
Minor Allele Frequence	0.111821
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000438375, ENST00000526536, ENST00000527524, ENST00000533291); non_coding_transcript_variant(ENST00000526536, ENST00000533291)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Pickard, B. S., 2006	A/G		P-value = 0.708 between BPD cases and controls; P-value = 0...... P-value = 0.708 between BPD cases and controls; P-value = 0.514 between all cases and controls More...		Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
GRIK4	glutamate receptor, ionotropic, kainate 4	11q23.3	2(1/1/0)

SNPs in LD with rs3132780 (count: 3) View in gBrowse (chr11:120744078..120757303 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs3133864	intron_variant; non_coding_transcript_variant	0.887[CEU]; 0.905[TSI]
rs3133224	intron_variant; non_coding_transcript_variant	0.832[CEU]
rs3133865	intron_variant; non_coding_transcript_variant	0.877[CEU]

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Pickard, B. S., 2006	P-value = 0.464 between SCZ cases and controls; P-value = 0.514 between all cases and controls		Negative

Overlap with MDD from cross-disorder studies (count: 0)