SNP Report

Basic Info

Name	rs3025702 dbSNP Ensembl
Location	chr16:3810639 - 3810639(1)
Variant Alleles	A/G
Ancestral Allele	G
Minor Allele	G
Minor Allele Frequence	0.0846645
Functional Annotation	downstream_gene_variant; synonymous_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000635899, ENST00000636895); synonymous_variant(ENST00000262367, ENST00000382070)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	YES

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Crisafulli, C.,2012	A/G		Association analysis: genotype P-value = 0.5, chi square=3.3...... Association analysis: genotype P-value = 0.5, chi square=3.33; allele P-value = 0.46, chi square=1.53 More...	No significant association was observed in BD. No significant association was observed in BD.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CREBBP	CREB binding protein	16p13.3	1(0/1/0)

SNPs in LD with rs3025702 (count: 25) View in gBrowse (chr16:3730330..3875179 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs130025	intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[JPT]
rs6500556	intron_variant; non_coding_transcript_variant	1.0[JPT]
rs130006	downstream_gene_variant; intron_variant	1.0[JPT]
rs3025697	downstream_gene_variant; intron_variant; upstream_gene_variant	1.0[JPT]
rs8055118	intron_variant; non_coding_transcript_variant	1.0[JPT]
rs9921319	intron_variant; non_coding_transcript_variant	1.0[JPT]
rs2110534	intron_variant	1.0[JPT]
rs130030	intron_variant; upstream_gene_variant	1.0[JPT]
rs13332076	intron_variant	1.0[JPT]
rs9929384	intron_variant	1.0[JPT]
rs4567717	intron_variant; non_coding_transcript_variant	1.0[JPT]
rs1296721	intron_variant; non_coding_transcript_variant	1.0[JPT]
rs2540038	intron_variant	1.0[JPT]
rs9940938	intron_variant	1.0[JPT]
rs130018	downstream_gene_variant; intron_variant; upstream_gene_variant	1.0[JPT]
rs13334803	downstream_gene_variant; intron_variant	1.0[JPT]
rs130046	intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[JPT]
rs6500553	intron_variant; non_coding_transcript_variant	1.0[JPT]
rs8044812	intron_variant	1.0[JPT]
rs130037	downstream_gene_variant; intron_variant	1.0[JPT]
rs129985	intron_variant; upstream_gene_variant	1.0[JPT]
rs130028	intron_variant; non_coding_transcript_variant	1.0[JPT]
rs9936092	intron_variant	1.0[JPT]
rs130007	downstream_gene_variant; intron_variant	1.0[JPT]
rs130045	intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[JPT]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Crisafulli, C.,2012	Association analysis:genotype P-value = >0.05;allele P-value > 0.05	No significant association was observed in MDD.	Negative