SNP Report

Basic Info
Name rs2978012 dbSNP Ensembl
Location chr8:133526953 - 133526953(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.194289
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000399640, ENST00000517668, ENST00000518298, ENST00000519435, ENST00000521180, ENST00000522652, ENST00000522873); non_coding_transcript_variant(ENST00000518298, ENST00000519435, ENST00000522873)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Perlis, 2008 Mean X2=6.82, P-value = 0.009 in gene-based assoc...... Mean X2=6.82, P-value = 0.009 in gene-based association tests More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 8q24.22 4(3/0/1)

SNPs in LD with rs2978012 (count: 3) View in gBrowse (chr8:133526953..133529299 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 3)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)