BDgene

SNP Report

Basic Info
Name rs2976515 dbSNP Ensembl
Location chr8:32681275 - 32681275(1)
Variant Alleles A/C
Ancestral Allele A
Minor Allele A
Minor Allele Frequence 0.131989
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000287842, ENST00000356819, ENST00000405005, ENST00000518104, ENST00000518206, ENST00000519301, ENST00000520407, ENST00000520502, ENST00000521670, ENST00000522569, ENST00000523041, ENST00000523079, ENST00000523534, ENST00000631040); non_coding_transcript_variant(ENST00000522569)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Cao L., 2014 A/C Total BPI vs. controls: X2=0.6, OR=0.87, 95%CI=0....... Total BPI vs. controls: X2=0.6, OR=0.87, 95%CI=0.62-1.23, Bonf P-value=1; BPI-P vs. controls: X2=1.48, OR=0.78, 95%CI=0.52-1.17, Bonf P-value=1; BPI-NP vs. controls: X2=1.35, OR=1.33, 95%CI=0.82-2.18, Bonf P-value=1 More... No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
NRG1 neuregulin 1 8p12 15(10/5/0)

SNPs in LD with rs2976515 (count: 18) View in gBrowse (chr8:32660839..32721481 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 18)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016