SNP Report

Basic Info

Name	rs2850699 dbSNP Ensembl
Location	chr18:65450257 - 65450257(1)
Variant Alleles	T/G
Ancestral Allele	G
Minor Allele	G
Minor Allele Frequence	0.462859
Functional Annotation	downstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000582028)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Sklar, P., 2008	C/A		CMH (Cochran-Mantel-Haenszel) P-value = 2.78E-05, allelic P-...... CMH (Cochran-Mantel-Haenszel) P-value = 2.78E-05, allelic P-value = 6.02E-05, OR=1.22, pSNP test P-value = 6.02E-05, pHAP test P-value = 4.40E-05, r²=0.95 More...		Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CDH7	cadherin 7, type 2	18q22.1	1(0/0/1)

SNPs in LD with rs2850699 (count: 47) View in gBrowse (chr18:65445147..65529332 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs17074935		1.0[CEU]; 1.0[TSI]
rs4432354		1.0[CEU]
rs12962841		0.922[CEU]; 0.931[TSI]
rs681307		1.0[CEU]; 1.0[TSI]
rs976883		1.0[CEU]; 0.954[TSI]
rs11151200		0.885[CEU]
rs607524		1.0[CEU]
rs4474792		1.0[CEU]
rs1972437		1.0[CEU]
rs518112	intron_variant; non_coding_transcript_variant	0.849[CEU]
rs12957062		0.919[CEU]
rs12970778		0.961[CEU]; 0.954[TSI]
rs2166029		1.0[CEU]
rs4637016		1.0[CEU]
rs12955521		1.0[CEU]
rs976882		1.0[CEU]; 0.954[TSI]
rs574038	downstream_gene_variant	1.0[CEU]
rs11664181		1.0[CEU]
rs10871586		0.961[CEU]
rs1944309		1.0[CEU]; 0.931[TSI]
rs11874229		1.0[CEU]; 0.977[TSI]
rs11660957		1.0[CEU]; 0.954[TSI]
rs1305779	downstream_gene_variant	1.0[CEU]
rs2333428		1.0[CEU]
rs12607695		1.0[CEU]
rs2850701		1.0[CEU]; 0.977[TSI]
rs591249		1.0[CEU]
rs529979	downstream_gene_variant	1.0[CEU]
rs4493167		1.0[CEU]
rs489148		1.0[CEU]
rs9807550		1.0[CEU]
rs12971182		1.0[CEU]
rs653986	downstream_gene_variant	1.0[CEU]
rs1789483		1.0[CEU]; 0.977[TSI]
rs7241038		1.0[CEU]; 0.977[TSI]
rs2156607		1.0[CEU]
rs12955174		1.0[CEU]
rs2850703		1.0[CEU]
rs610091	downstream_gene_variant	1.0[CEU]; 1.0[TSI]
rs687080	intron_variant; non_coding_transcript_variant	1.0[CEU]; 1.0[TSI]
rs7233342		1.0[CEU]
rs562492	intron_variant; non_coding_transcript_variant	1.0[CEU]
rs2658048	intron_variant; non_coding_transcript_variant	1.0[CEU]
rs582148	intron_variant; non_coding_transcript_variant	1.0[CEU]
rs2850702		1.0[CEU]
rs1444068		1.0[CEU]
rs1838308		1.0[CEU]; 0.954[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)