SNP Report

Basic Info
Name rs2850699 dbSNP Ensembl
Location chr18:65450257 - 65450257(1)
Variant Alleles T/G
Ancestral Allele G
Minor Allele G
Minor Allele Frequence 0.462859
Functional Annotation downstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000582028)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Sklar, P., 2008 C/A CMH (Cochran-Mantel-Haenszel) P-value = 2.78E-05, allelic P-...... CMH (Cochran-Mantel-Haenszel) P-value = 2.78E-05, allelic P-value = 6.02E-05, OR=1.22, pSNP test P-value = 6.02E-05, pHAP test P-value = 4.40E-05, r2=0.95 More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CDH7 cadherin 7, type 2 18q22.1 1(0/0/1)

SNPs in LD with rs2850699 (count: 47) View in gBrowse (chr18:65445147..65529332 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 47)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)