SNP Report

Basic Info

Name	rs2617605 dbSNP Ensembl
Location	chrCHR_HSCHR5_3_CTG1:1385665 - 1385665(-1)
Variant Alleles	C/T
Ancestral Allele	T
Minor Allele	C
Minor Allele Frequence	0.256589
Functional Annotation	intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000270349); non_coding_transcript_exon_variant(ENST00000630039); non_coding_transcript_variant(ENST00000630039)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Mick, E., 2008		C	TDT X²(df=1)=0.56, P-value = 0.499, OR (95% CI)=1...... TDT X²(df=1)=0.56, P-value = 0.499, OR (95% CI)=1.09(0.78-1.51) More...		Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
SLC6A3	solute carrier family 6 (neurotransmitter transporter), member 3	5p15.3	11(5/6/0)

SNPs in LD with rs2617605 (count: 0) View in gBrowse (chrCHR_HSCHR5_3_CTG1:1385665..1385665 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)