BDgene

SNP Report

Basic Info
Name rs2537859 dbSNP Ensembl
Location chr4:54616651 - 54616651(1)
Variant Alleles C/T
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.465455
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Scott, L. J.,2009 T/C NIMH/Pritzker: OR (95% CI)=1.05(0.91-1.20), P-value = 0.53; ...... NIMH/Pritzker: OR (95% CI)=1.05(0.91-1.20), P-value = 0.53; GSK(reduced sample): OR (95% CI)=1.41(1.21-1.65), P-value = 0.000011; WTCCC: OR (95% CI)=1.14(1.06-1.23), P-value = 0.00071; 3-study meta-analysis: OR (95% CI)=1.16(1.09-1.24), P-value = 0.0000042; Heterogeneity: I2%=76, P-value = 0.014 More... Trend

SNP related genes (count: 0)

SNPs in LD with rs2537859 (count: 2) View in gBrowse (chr4:54615418..54616651 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 2)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016