BDgene

SNP Report

Basic Info
Name rs2400795 dbSNP Ensembl
Location chr5:102439635 - 102439635(1)
Variant Alleles T/C
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.417732
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000379807, ENST00000389019, ENST00000505739, ENST00000506729, ENST00000513675, ENST00000514551); non_coding_transcript_variant(ENST00000505739, ENST00000514551)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Khan, R. A., 2016 C/T P-value=0.428, OR=0.956, 95%CI=0.856-1.068 P-value=0.428, OR=0.956, 95%CI=0.856-1.068 All four SNPs showed no association with BPD. All four SNPs showed no association with BPD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SLCO6A1 solute carrier organic anion transporter family, member 6A1 5q21.2 Mapped by Literature SNP

SNPs in LD with rs2400795 (count: 119) View in gBrowse (chr5:102248795..102525178 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 119)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016