BDgene

SNP Report

Basic Info
Name rs2286677 dbSNP Ensembl
Location chr17:66884671 - 66884671(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.0297524
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000307139, ENST00000533854)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Jan, W. C., 2014 G/A OR=0.73, 95%CI=0.16-3.29, P-value=0.68 for BD-I; OR=1.59, 95...... OR=0.73, 95%CI=0.16-3.29, P-value=0.68 for BD-I; OR=1.59, 95%CI=0.82-3.08, P-value=0.17 for BD-II. More... Results of single marker association tests. Results of single marker association tests. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CACNG5 calcium channel, voltage-dependent, gamma subunit 5 17q24 2(1/1/0)

SNPs in LD with rs2286677 (count: 6) View in gBrowse (chr17:66869690..66894432 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 6)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016